J. Duitama

Journal Articles:

F. Duan and J. Duitama and S. Al Seesi and C. Ayres and S. Corcelli and A. Pawashe and T. Blanchard and D. McMahon and J. Sidney and A. Sette and B. Baker and I.I. Mandoiu and P.K. Srivastava, Genomic and bioinformatic profiling of mutational neo-epitopes reveals new rules to predict anti-cancer immunogenicity, Journal of Experimental Medicine 211, pp. 2231-2248, 2014, publisher url, bibtex

J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, BMC Genomics 13(Suppl 2):S6, 2012, pdf preprint, publisher url, bibtex

J. Duitama and J. Kennedy and S. Dinakar and Y. Hernandez and Y. Wu and I.I. Mandoiu, Linkage Disequilibrium Based Genotype Calling from Low-Coverage Shotgun Sequencing Reads, BMC Bioinformatics 12(Suppl 1):S53, 2011, pdf preprint, publisher url, bibtex

J. Duitama and D.M. Kumar and E. Hemphill and M. Khan and I.I. Mandoiu and C.E. Nelson, PrimerHunter: A Primer Design Tool for PCR-Based Virus Subtype Identification, Nucleic Acids Research 37, pp. 2483-2492, 2009, pdf preprint, publisher url, bibtex

Conference Articles:

J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, Proc. 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, pp. 87-92, 2011, pdf preprint, publisher url, ppt, bibtex

J. Duitama and T. Huebsch and G. McEwen and E. Suk and M.R. Hoehe, ReFHap: A Reliable and Fast Algorithm for Single Individual Haplotyping, BCB '10: Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, pp. 160-169, 2010, pdf preprint, publisher url, bibtex

Ph.D. Thesis:

J. Duitama, Bioinformatics Methods for Diagnosis and Treatment of Human Diseases, University of Connecticut, Storrs, CT, Dec., 2010, pdf preprint, ppt, bibtex