Book Chapters:

S. Al Seesi and S. Mangul and A. Caciula and A. Zelikovsky and I.I. Mandoiu, Transcriptome reconstruction and quantification from RNA sequencing data, In Maria Poptsova, Genome Analysis: Current Procedures and Applications, Caister Academic Press, pp. 39-60, 2014, publisher url, bibtex

Conference Articles:

M. Nicolae and I.I. Mandoiu, Accurate Estimation of Gene Expression Levels from DGE Sequencing Data, Proc. 7th International Symposium on Bioinformatics Research and Applications , pp. 392-403, 2011, pdf preprint, publisher url, ppt, bibtex

M.S. Theses:

M. Nicolae, Accurate Estimation of Isoform and Gene Expression Levels from Next Generation Sequencing Data, University of Connecticut, Storrs, CT, September, 2011, pdf preprint, bibtex