Publications

2008

Edited Books & Proceedings:


I.I. Mandoiu and A.Z. Zelikovsky (Eds.), Bioinformatics Algorithms: Techniques and Applications, John Wiley & Sons , 2008, publisher url, bibtex

I.I. Mandoiu and R. Sunderraman and A. Zelikovsky (Eds.), Proc. 4th International Symposium on Bioinformatics Research and Applications, Springer-Verlag Lecture Notes in Bioinformatics vol. 4983, 2008, publisher url, bibtex

Book Chapters:


K.M. Konwar and I.I. Mandoiu and A. Russell and A. Shvartsman, Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints, In I.I. Mandoiu and A.Z. Zelikovsky, Bioinformatics Algorithms: Techniques and Applications, Wiley, pp. 241-258, 2008, pdf preprint, publisher url, bibtex

Journal Articles:


J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Journal of Computational Biology 15, pp. 1155-1171, 2008, pdf preprint, publisher url, bibtex

A. Gusev and I.I. Mandoiu and B. Pasaniuc, Highly Scalable Genotype Phasing by Entropy Minimization, IEEE/ACM Trans. on Computational Biology and Bioinformatics 5, pp. 252-261, 2008, pdf preprint, publisher url, bibtex

Conference Articles:


S. Balla and S. Rajasekaran and I.I. Mandoiu, Faster Greedy Algorithms for Multiple Degenerate Primer Selection, Proc. 8th IEEE International Conference on Bioinformatics and Bioengineering, pp. 1-4, 2008, publisher url, bibtex

J. Jun and P. Ryvkin and E. Hemphill and I.I. Mandoiu and C.E. Nelson, Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events During Mammalian Evolution, Proc. 6th Annual RECOMB Satellite Workshop on Comparative Genomics, pp. 40-54, 2008, pdf preprint, publisher url, bibtex

B. Dasgupta and J. Jun and I.I. Mandoiu, Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP, Proc. 6th Asia-Pacific Bioinformatics Conference, pp. 353-362, 2008, pdf preprint, publisher url, bibtex

Ph.D. Thesis:


B. Pasaniuc, Scalable Algorithms for Analysis of Genomic Diversity Data, University of Connecticut, Storrs, CT, May, 2008, pdf preprint, url, ppt, bibtex