Publications

2016

Edited Books & Proceedings:


I.I. Mandoiu and A.Z. Zelikovsky (Eds.), Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons , 2016, publisher url, bibtex

Book Chapters:


E. Nenastyeva and B. Tork and A. Artyomenko and N. Mancuso and M.I. Khan and R. O'Neill and I.I. Mandoiu and A. Zelikovsky, Reconstruction of Infectious Bronchitis Virus Quasispecies from NGS Data, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 383-400, 2016, publisher url, bibtex

O. Glebova and Y. Temate-Tiagueu and A. Caciula and S. Al Seesi and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Transcriptome Quantification and Differential Expression from NGS Data, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 301-327, 2016, publisher url, bibtex

I. Mandric and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Scaffolding Algorithms, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 105-131, 2016, publisher url, bibtex

P. Skums and A. Artyomenko and O. Glebova and S. Ramachandran and D.S. Campo and Z. Dimitrova and I.I. Mandoiu and A. Zelikovsky and Y. Khudyakov, Pooling Strategy for Massive Viral Sequencing, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 57-83, 2016, publisher url, bibtex

Journal Articles:


S. Al Seesi and A. Das Mohapatra and A. Pawashe and I.I. Mandoiu and F. Duan, Finding neoepitopes in mouse models of personalized cancer immunotherapy, Frontiers in Biology 11, pp. 366-375, 2016, publisher url, bibtex

Y. Temate-Tiagueu and S. Al Seesi and M. Mathew and I. Mandric and A. Rodriguez and K. Bean and Q. Cheng and O. Glebova and I.I. Mandoiu and N.B. Lopanik and A. Zelikovsky, Inferring metabolic pathway activity levels from RNA-Seq data, BMC Genomics 17(Suppl 5):542, pp. 493-503, 2016, publisher url, bibtex

D.K.P. Karunakaran and S. Al Seesi and A.R. Banday and M. Baumgartner and A. Olthof and C. Lemoine and I.I. Mandoiu and R.N. Kanadia, Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development , BMC Genomics 17(Suppl 5):495, pp. 477-492, 2016, publisher url, bibtex

M Mathew and KI Bean and YT Tiagueu and A Caciula and I.I. Mandoiu and A Zelikovsky and NB Lopanik, Influence of symbiont-produced bioactive natural product on holobiont fitness in the marine bryozoan, Bugula neritina via protein kinase C (PKC), Marine Biology 163:44, 2016, publisher url, bibtex