Abstracts and Unpublished Presentations

Year: 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004

Author: S. Al Seesi S. Dinakar J. Duitama A. Gusev G. Ilie J. Jun J. Kennedy J. Lindsay I.I. Mandoiu M. Nicolae B. Pasaniuc C. Prajescu


F. Duan and J. Duitama and S. Al Seesi and C. Ayres and S. Corcelli and A. Pawashe and T. Blanchard and D. McMahon and J. Sidney and A. Sette and B. Baker and I.I. Mandoiu and P.K. Srivastava, Genomic and bioinformatic profiling of mutational neo-epitopes reveals new rules to predict anti-cancer immunogenicity, Poster at ImmunoGenomics Symposium at The Jackson Laboratory for Genomic Medicine, Nov 12-14, 2014, ppt, abstract, url

A. Caciula and O. Glebova and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Simulated Regression Algorithm for Transcriptome Quantification, 10th International Symposium on Bioinformatics Research and Applications, June 28-30, 2014, abstract, url

I. Mandric and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, SILP3: Maximum Likelihood Approach to Scaffolding, Proc. 4th IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 2-4, 2014, abstract, url

A. Caciula and O. Glebova and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Deterministic Regression Algorithm for Transcriptome Frequency Estimation, Proc. 4th IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 2-4, 2014, abstract, url

I.I. Mandoiu, Scalable Algorithms for Next-Generation Sequencing Data Analysis, JAX-UCONN/BECAT/UCHC Workshop on Bioinformatics and Computational Biology, Sept. 4, 2013, ppt, url

S. Al Seesi and Y.T. Tiagueu and A. Zelikovsky and I.I. Mandoiu, Accurate differential gene expression analysis for RNA-Seq data without replicates, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

J. Lindsay and C.E. Nelson and I.I. Mandoiu, Gene expression deconvolution using single cells, 63rd Annual Meeting of the American Society of Human Genetics, Oct 22-26, 2013, url

J. Lindsay and C.E. Nelson and I.I. Mandoiu, Towards Whole Transcriptome Deconvolution Using Single-cell Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

G. Ilie and A. Zelikovsky and I.I. Mandoiu, Reference Assisted Nucleic Acid Sequence Reconstruction from Mass Spectrometry Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

S. Mangul and S. Al Seesi and A. Caciula and D. Brinza and I.I. Mandoiu and A. Zelikovsky, Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

A. Artyomenko and N. Mancuso and I.I. Mandoiu and P. Skums and A. Zelikovsky, kGEM: An EM-based Algorithm for Correction of Amplicon Reads from Viral Quasispecies, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

N. Mancuso and A. Artyomenko and P. Skums and I.I. Mandoiu and A. Zelikovsky, Estimation of Viral Population Structure from Amplicon-Based Reads, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

A. Caciula and A. Zelikovsky and S. Mangul and J. Lindsay and I.I. Mandoiu, Monte-Carlo Regression Algorithm for Isoform Frequency Estimation from RNA-Seq Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

P. Skums and O. Glebova and A. Zelikovsky and I.I. Mandoiu and Y. Khudyakov, Optimizing pooling strategies for the massive next-generation sequencing of viral samples, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

G. Ilie and A. Zelikovsky and I.I. Mandoiu, Reference Assisted Nucleic Acid Sequence Reconstruction from Mass Spectrometry Data, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

A. Caciula and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Transcriptome Reconstruction from Single RNA-Seq Reads Using Expectation Maximization Algorithm with Expected Deviation Minimization Enhancement, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

J. Lindsay and C. Jakuba and C.E. Nelson and I.I. Mandoiu, Gene Expression Deconvolution with Single-cell Data, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

B. Tork and A. Zelikovsky and I.I. Mandoiu and R.J. O'Neill and M. Khan and E. Nenastyeva and A. Artyomenko and N. Mancuso, Reconstruction of Infectious Bronchitis Virus Quasispecies from NGS Data, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

A. Artyomenko and N. Mancuso and P. Skums and I.I. Mandoiu and A. Zelikovsky, kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

E. Nenastyeva and Y. Ionov and I.I. Mandoiu and A. Zelikovsky, Using Random Peptide Phage Display Libraries for early Breast cancer detection, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

E. Hemphill and J. Lindsay and C. Lee and C.E. Nelson and I.I. Mandoiu, Biomarker and Classifier Selection in Diverse Genetic Datasets, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

I.I. Mandoiu, Reconstruction of Haplotype Spectra from NGS Data, IPDPS Workshop on Future Computing Platforms to Accelerate Next-Gen Sequencing Applications, May 19, 2013, ppt, url

I.I. Mandoiu, Scalable Algorithms for Next-Generation Sequencing Data Analysis, Booth Engineering Center for Advanced Technology Workshop on HPC, May 16, 2013, ppt, url

I.I. Mandoiu, Bioinformatics Tools for Viral Quasispecies Reconstruction from Next-Generation Sequencing Data and Vaccine Optimization , USDA NIFA Agriculture and Food Research Initiative - Animal Breeding, Genetics and Genomics Project Director Meeting, Jan. 11, 2013, ppt

I.I. Mandoiu and R.J. O'Neill and M. Khan and A. Zelikovsky and B. Tork and N. Mancuso, Bioinformatics methods for reconstruction of infectious bronchitis virus quasispecies from next generation sequencing data, 11th International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases, New Orleans, LA, Oct. 30 – Nov. 2, 2012, ppt, url

I.I. Mandoiu, Towards Personalized Genomics-Guided Cancer Immunotherapy, UConn/JAX Genomics Symposium, Sept 6-7, 2012, ppt, url

N. Mancuso and B. Tork and P. Skums and I.I. Mandoiu and A. Zelikovsky, Multi-Commodity Flow Methods for Quasispecies Spectrum Reconstruction Given Amplicon Reads, 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, abstract, url

S. Mangul and A. Caciula and N. Mancuso and O. Glebova and I.I. Mandoiu and A. Zelikovsky, An Integer Programming Approach to Novel Transcript Reconstruction from Paired-End RNA-Seq Reads, Poster at 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, abstract, url

J. Lindsay and H. Salooti and A. Zelikovsky and I.I. Mandoiu, Scaffolding Large Genomes using Integer Linear Programming, 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, ppt, abstract, url

S. Al Seesi and I.I. Mandoiu, Inference of allele specific expression levels from RNA-Seq data, Poster at 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, ppt, abstract, url

S. Mangul and A. Caciula and N. Mancuso and I.I. Mandoiu and A. Zelikovsky, An Integer Programming Approach to Novel Transcript Reconstruction from Paired‐End RNA‐Seq Reads, Poster at 16th Annual International Conference on Research in Computational Molecular Biology, April 21-24, 2012, ppt, abstract, url

S. Al Seesi and I.I. Mandoiu, Inference of allele specific expression levels from RNA-Seq data, Proc. 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, ppt, abstract, url

S. Mangul and A. Caciula and I.I. Mandoiu and A. Zelikovsky, Novel Transcript Reconstruction from Paired-End RNA-Seq Reads Using Fragment Length Distribution, Proc. 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, abstract, url

N. Mancuso and B. Tork and P. Skums and L. Ganova-Raeva and I.I. Mandoiu and A. Zelikovsky, A Maximum Likelihood Method For Quasispecies Spectrum Assembly, Proc. 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, ppt, abstract, url

R.J. O'Neill and I.I. Mandoiu and M. Khan and C. Obergfell and H. Wang and A. Bligh and B. Tork and N. Mancuso and A. Zelikovsky, Bioinformatics Methods For Reconstruction Of Infectious Bronchitis Virus Quasispecies From Next Generation Sequencing Data, Proc. 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, abstract, url

J. Lindsay and I.I. Mandoiu and H. Salooti and A. Zelikovsky, Accurate Scaffolding of Large Genomes using Integer Programming and Non-Serial Dynamic Programming, Poster at 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, ppt, abstract, url

I.I. Mandoiu, Inferring Viral Quasispecies Spectra from NGS Reads, Invited talk, Brown University Center for Computational Molecular Biology, Feb. 1, 2012, ppt, url

I.I. Mandoiu and M. Khan and R.J. O’Neill and A. Zelikovsky and C. Obergfell and H. Wang and A. Bligh and B. Tork and N. Mancuso, Bioinformatics Tools for Viral Quasispecies Reconstruction from Next-Generation Sequencing Data and Vaccine Optimization , Poster at the USDA NIFA Animal Genetics, Genomics and Breeding Program Annual Investigator Meeting, Jan. 13, 2012, ppt

S. Mangul and A. Caciula and I.I. Mandoiu and A. Zelikovsky, RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes, Poster at 8th Georgia Tech-Emory International Conference on Bioinformatics, November 10-12, 2011, ppt

I.I. Mandoiu and S. Al Seesi, Bioinformatics Pipelines for RNA-Seq Data Analysis, Tutorial at 5th IEEE International Conference on Bioinformatics and Biomedicine, Atlanta GA, Nov. 12-15, 2011, ppt, url

I.I. Mandoiu, Reconstruction of infectious bronchitis virus quasispecies from 454 pyrosequencing reads, Invited talk, 1st Workshop on Computational Advances in Molecular Epidemiology, Nov. 13, 2011, ppt, url

S. Mangul and I. Astrovskaya and B. Tork and I.I. Mandoiu and A. Zelikovsky, Viral Quasispecies Reconstruction Based on Unassembled Frequency Estimation, 7th International Symposium on Bioinformatics Research and Applications, Changsha, China, May 27-29, 2011, ppt, abstract, url

I.I. Mandoiu and A. Zelikovsky, Computational Advances for Next Generation Sequencing, Training course in conjunction with 1st SelectBiosciences Next-Gen Sequencing Congress, Boston, MA , April 28, 2011, ppt, url

M. Nicolae and I.I. Mandoiu, Accurate Estimation of Gene Expression Levels from DGE Sequencing Data, Invited talk, 1st Annual RECOMB Satellite Workshop on Massively Parallel Sequencing, March 26-27, 2011, ppt, url

I.I. Mandoiu, Next-Generation Sequencing: Challenges and Opportunities, Invited talk, UCONN Department of Physiology and Neurobiology, March 16, 2011, ppt, url

I.I. Mandoiu, Bioinformatics Tools for Personalized Cancer Immunotherapy, Invited talk, UCONN Working Group on Multiscale Computational Science and Engineering , Feb. 25, 2011, ppt

M. Nicolae and I.I. Mandoiu, Empirical Comparison of Protocols for Sequencing-Based Gene and Isoform Expression Profiling, Poster at 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 3-5, 2011, ppt, abstract, url

J. Lindsay and J. Zhang and T. Farnham and E. Bullwinkel and H. Salooti and I.I. Mandoiu and Y. Wu and A. Zelikovsky and R.J. O'Neill, Scaffolding Draft Genomes Using Paired Sequencing Data, Poster at 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 3-5, 2011, ppt, abstract, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of Alternative Splicing Isoform Frequencies From RNA-Seq Data, INFORMS Annual Meeting, Austin, TX, Nov. 7-10, 2010, ppt, url

I.I. Mandoiu, Estimation of alternative splicing isoform frequencies from RNA-Seq data, Invited talk, Max Planck Institute for Molecular Genetics, July 19, 2010, ppt, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of alternative splicing isoform frequencies from RNA-Seq data, Dagstuhl seminar on Structure Discovery in Biology: Motifs, Networks & Phylogenies, June 6-11, 2010, ppt, abstract, url

C. Lee and I.I. Mandoiu and C.E. Nelson, Inferring Ethnicity from Mitochondrial DNA Sequence, 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of alternative splicing isoform frequencies from RNA-Seq data, 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

J. Lindsay and J. Zhang and I.I. Mandoiu and Y. Wu and M. Renfree and A. Pask and T. Heider and C. Obergfell and R.J. O'Neill, Novel multi-platform next generation assembly methods for mammalian genomes, Poster at 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

Y. Huang and M. Khan and I.I. Mandoiu, Development of Real Time RT-PCR Assays for Neuraminidase Subtyping of Avian Influenza Virus, Poster at 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

J. Lindsay and D.M. Carone and E. Murchison and A. Pask and G.J. Hannon and I.I. Mandoiu and R.J. O'Neill, Unique small RNA signatures uncovered in the tammar wallaby genome, 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

J. Duitama, Bioinformatics Methods for Diagnosis and Treatment of Human Diseases, Ph.D. Dissertation Proposal, Dec. 2, 2009, ppt

J. Duitama and I.I. Mandoiu and P.K. Srivastava, Bioinformatics pipeline for detection of immunogenic cancer mutations by high throughput mRNA sequencing, Talk at 9th Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics, Oct 27-30, 2009, ppt, abstract, url

S. Dinakar and J. Duitama and Y. Hernandez and J. Kennedy and I.I. Mandoiu and Y. Wu, Linkage Disequilibrium Based Single Individual Genotyping from Low-Coverage Short Sequencing Reads, Poster at 13th Annual International Conference on Research in Computational Molecular Biology, Tucson, AZ, May 17-21, 2009, ppt, url

J. Duitama and I.I. Mandoiu and P.K. Srivastava, Bioinformatics pipeline for detection of immunogenic cancer mutations by high throughput mRNA sequencing, Poster, 5th International Symposium on Bioinformatics Research and Applications, Ft. Lauderdale, FL, May 13-16, 2009, ppt, abstract, url

I.I. Mandoiu, Imputation-based local ancestry inference in admixed populations, DIMACS Workshop on Algorithmics in Human Population-Genomics, DIMACS Center, Rutgers University, Apr. 27-29, 2009, ppt, url

I.I. Mandoiu, Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads, Proc. 1st International Conference on Bioinformatics and Computational Biology, New Orleans, LA, Apr. 8-10, 2009, ppt, abstract, url

S. Dinakar, J. Duitama, Y. Hernandez, J. Kennedy, I.I. Mandoiu, and Y. Wu, Algorithms for Genotype and Haplotype Inference from Low-Coverage Short Sequencing Reads, 11th INFORMS Computing Society Conference, Charleston, SC, Jan. 11-13, 2009, ppt, url

J. Duitama and D.M. Kumar and E. Hemphill and S. Babapoor and I.I. Mandoiu and C.E. Nelson and M. Khan , DNA Barcoding: Preliminary Studies with Avian Influenza Virus, Poster, 2008 AAAP/AVMA Annual Meeting, New Orleans, LA, July 19-23, 2008, ppt, url

I.I. Mandoiu, LD-Based Genotype and Haplotype Inference from Low-Coverage Short Sequencing Reads, Invited talk, UCLA bioinformatics seminar series, Nov. 3, 2008, ppt, url

I.I. Mandoiu, Linkage Disequilibrium Based SNP Genotype Calling from Short Sequencing Reads, Invited talk, SoE-UCHC Bioengineering Research Forum, UCONN Health Center, Farmington, CT, Oct. 29, 2008, ppt, url

I.I. Mandoiu, Hidden Markov Models of Haplotype Diversity and Applications in Genetic Epidemiology, INFORMS Annual Meeting, Oct. 12-15, 2008, ppt, url

S. Dinakar and J. Duitama and Y. Hernandez and J. Kennedy and I.I. Mandoiu and Y. Wu, Linkage Disequilibrium Based Single Individual Genotyping from Low-Coverage Short Sequencing Reads, Poster at 2008 Personal Genomes Meeting, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA, Oct 9-12, 2008, ppt, url

S. Dinakar and Y. Hernandez and J. Kennedy and I.I. Mandoiu and Y. Wu, Linkage Disequilibrium Based Single Individual Genotyping from Low-Coverage Short Sequencing Reads, Poster at 2008 Meeting on Genomics of Common Diseases, The Broad Institute of MIT and Harvard, Cambridge, MA, USA, September 6-9, 2008, ppt, url

J. Kennedy, Linkage Disequilibrium Based Single Individual Genotyping from Low-Coverage Short Sequencing Reads, DIMACS Workshop on Computational Issues in Genetic Epidemiology, DIMACS Center, Rutgers University, August 21 - 22, 2008, ppt, url

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection and Imputation using Hidden Markov Models of Haplotype Diversity, Poster, 4th International Symposium on Bioinformatics Research and Applications, Atlanta, GA, May 6-9, 2008, ppt, abstract, url

J. Duitama and M. Khan and I.I. Mandoiu and D.M. Kumar and C.E. Nelson, PrimerHunter: A Primer Selection Tool for Avian Influenza Subtype Identification, Poster, 4th International Symposium on Bioinformatics Research and Applications, Atlanta, GA, May 6-9, 2008, ppt, abstract, url

I.I. Mandoiu, Computational Challenges in Whole-Genome Association Studies, SoE-UCHC Bioengineering Research Forum, University of Connecticut, Storrs, CT, April 22, 2008, ppt, url

I.I. Mandoiu, Rational DNA sequence design for molecular nanotechnology, SoE Nanotechnology Research Forum, University of Connecticut, Storrs, CT, March 5, 2008, ppt, url

J. Kennedy, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, 3rd RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes, Los Angeles, CA, Jan. 27-28, 2007, ppt, url

R. Garfinkel and I.I. Mandoiu and B. Pasaniuc and A. Zelikovsky, Optimal Testing of Digital Microfluidic Biochips: A Multiple Traveling Salesman Problem, INFORMS Annual Meeting, Seattle, WA, Nov. 4-7, 2007, ppt, url

I.I. Mandoiu, Algorithms for Biochip Design and Optimization, Adjacency Lecture, Cadence Research Laboratories, Berkeley, CA, Nov. 1, 2007, ppt, url

A. Gusev and S. Kentros and J. Lindsay and I.I. Mandoiu and B. Pasaniuc, A Comparison of Algorithms for Species Identification Based on DNA Barcodes, Invited talk, 2nd International Barcode of Life Conference, Academia Sinica, Taipei, Taiwan, Sept. 17-21, 2007, ppt, url

B. Dasgupta and J. Jun and I.I. Mandoiu, Primer selection methods for detection of genomic inversions and deletions via PAMP, 1st RECOMB Satellite Workshop on Computational Cancer Biology, San Diego, CA, Sept. 18-20, 2007, ppt, url

B. Pasaniuc, Model-based species identification using DNA barcodes, Invited talk, 39th Symposium on the Interface: Computing Science and Statistics, Philadelphia, PA, May 23-26, 2007, ppt, url

I.I. Mandoiu, Scalable Algorithms for Genotype and Haplotype Analysis, Tutorial, 3rd International Symposium on Bioinformatics Research and Applications, Atlanta, GA, May 7-10, 2007, ppt, url

I.I. Mandoiu, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Invited talk, 21st New England Statistics Symposium, Storrs, CT, April 21, 2007, ppt, url

I.I. Mandoiu, Algorithms for SNP Data Collection and Analysis, Invited colloquium, Department of Computer Science, University of Rhode Island, Nov. 10, 2006, ppt, url

I.I. Mandoiu, Design and Optimization of Universal DNA Arrays, Invited talk, Affymetrix, Inc., Santa Clara, CA, July 26, 2006, ppt, url

B. Pasaniuc, Boosting Assignment Accuracy by Combining Distance- and Character-Based Classifiers, The DNA Barcode Data Analysis Initiative (DBDAI): Developing Tools for a New Generation of Biodiversity Data, Paris, France, July 6-8, 2006, ppt, url

I.I. Mandoiu, Combinatorial algorithms for maximum likelihood tag SNP selection and haplotype inference, Invited talk, 3rd International Workshop on Applied Probability, May 15-18, 2006, ppt, url

I.I. Mandoiu, Design and Optimization of Universal DNA Arrays, Invited talk, DATE Workshop on Emerging CAD Challenges for Biochip Design, Munich, Germany, March 10, 2006, ppt, url

I.I. Mandoiu and C. Prajescu, High-Throughput SNP Genotyping by SBE/SBH, Poster, 2nd SECABC Fall Workshop on Biocomputing, Atlanta, GA, Oct. 27, 2005, ppt

I.I. Mandoiu and B. Pasaniuc, Trio Phasing by Entropy Minimization, Poster, 2nd SECABC Fall Workshop on Biocomputing, Atlanta, GA, Oct. 27, 2005, ppt

I.I. Mandoiu, Design and Optimization of Universal DNA Arrays, Invited talk, 2nd SECABC Fall Workshop on Biocomputing, Atlanta, GA, Oct. 27, 2005, ppt

J. Jun and I.I. Mandoiu, Optimal Tag SNP Selection for Haplotype Reconstruction, Poster, 13th Annual International Conference on Intelligent Systems for Molecular Biology, Detroit, MI, June 25-29, 2005, ppt, url

I.I. Mandoiu and B. Pasaniuc, Haplotype Inference by Entropy Minimization, Poster, 9th Annual International Conference on Research in Computational Molecular Biology, Boston, MA, May 14-18, 2005, ppt, url

N. Hundewale and I.I. Mandoiu and C. Prajescu and A. Zelikovsky, Integrated Design Flow for Universal DNA Tag Arrays, Poster, 9th Annual International Conference on Research in Computational Molecular Biology, Boston, MA, May 14-18, 2005, ppt, url

I.I. Mandoiu, Algorithms for universal DNA tag array design and optimization, Invited colloquium, Department of Computer Science Colloquium, Kent State University, Feb. 25, 2005, ppt, url

K.M. Konwar and I.I. Mandoiu and A.C. Russell and A.A. Shvartsman, Optimization Methods for Reliable Genomic-Based Pathogen Detection Systems, Poster, 2nd International Conference on Advanced Technologies for Homeland Security, Storrs, CT, Aug. 12-13, 2004, ppt, url

I.I. Mandoiu, Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints, Invited talk, 2nd Georgia State Biotech Symposium, Atlanta, GA, May 25, 2004, ppt