Abstracts and Unpublished Presentations

IsoEM

I.I. Mandoiu, Computational Methods for Analysis of Single Cell RNA-Seq Data, JAX-GM course on "Big Genomic Data Skills Training for Graduate Professors", May 14-19, 2017, ppt, url

I.I. Mandoiu, Challenges and Opportunities in Single Cell Transcriptomics, Keynote talk at 12th International Symposium on Bioinformatics Research and Applications, Minsk, Belarus, June 5-8, 2016, ppt, url

I.I. Mandoiu, Computational Methods for Analysis of Single Cell RNA-Seq Data, JAX-GM course on "Big Genomic Data Skills Training for Professors", May 23-27, 2016, ppt, url

I.I. Mandoiu, Computational Methods for Analysis of Single Cell RNA-Seq Data, CSHL course on Advanced Techniques in Molecular Neuroscience, June 30 -July 16, 2015, ppt, url

D.K.P. Karunakaran and S. Al Seesi and A. Rouf Banday and M. Baumgartner and A. Olthof and C. Lemoine and I.I. Mandoiu and Rahul Kanadia, Network-based bioinformatics analysis of spatio-temporal RNAseq data reveals transcriptional programs underpinning normal and aberrant retinal development, 11th International Symposium on Bioinformatics Research and Applications, Norfolk, VA, June 7-10, 2015, abstract, url

I.I. Mandoiu, Scalable Algorithms for Next-Generation Sequencing Data Analysis, JAX-UCONN/BECAT/UCHC Workshop on Bioinformatics and Computational Biology, Sept. 4, 2013, ppt, url

S. Al Seesi and Y.T. Tiagueu and A. Zelikovsky and I.I. Mandoiu, Accurate differential gene expression analysis for RNA-Seq data without replicates, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

S. Mangul and S. Al Seesi and A. Caciula and D. Brinza and I.I. Mandoiu and A. Zelikovsky, Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

A. Caciula and A. Zelikovsky and S. Mangul and J. Lindsay and I.I. Mandoiu, Monte-Carlo Regression Algorithm for Isoform Frequency Estimation from RNA-Seq Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

A. Caciula and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Transcriptome Reconstruction from Single RNA-Seq Reads Using Expectation Maximization Algorithm with Expected Deviation Minimization Enhancement, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

S. Al Seesi and I.I. Mandoiu, Inference of allele specific expression levels from RNA-Seq data, Poster at 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, ppt, abstract, url

S. Al Seesi and I.I. Mandoiu, Inference of allele specific expression levels from RNA-Seq data, Proc. 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, ppt, abstract, url

S. Mangul and A. Caciula and I.I. Mandoiu and A. Zelikovsky, RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes, Poster at 8th Georgia Tech-Emory International Conference on Bioinformatics, November 10-12, 2011, ppt

I.I. Mandoiu and S. Al Seesi, Bioinformatics Pipelines for RNA-Seq Data Analysis, Tutorial at 5th IEEE International Conference on Bioinformatics and Biomedicine, Atlanta GA, Nov. 12-15, 2011, ppt, url

I.I. Mandoiu and A. Zelikovsky, Computational Advances for Next Generation Sequencing, Training course in conjunction with 1st SelectBiosciences Next-Gen Sequencing Congress, Boston, MA , April 28, 2011, ppt, url

M. Nicolae and I.I. Mandoiu, Accurate Estimation of Gene Expression Levels from DGE Sequencing Data, Invited talk, 1st Annual RECOMB Satellite Workshop on Massively Parallel Sequencing, March 26-27, 2011, ppt, url

I.I. Mandoiu, Next-Generation Sequencing: Challenges and Opportunities, Invited talk, UCONN Department of Physiology and Neurobiology, March 16, 2011, ppt, url

M. Nicolae and I.I. Mandoiu, Empirical Comparison of Protocols for Sequencing-Based Gene and Isoform Expression Profiling, Poster at 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 3-5, 2011, ppt, abstract, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of Alternative Splicing Isoform Frequencies From RNA-Seq Data, INFORMS Annual Meeting, Austin, TX, Nov. 7-10, 2010, ppt, url

I.I. Mandoiu, Estimation of alternative splicing isoform frequencies from RNA-Seq data, Invited talk, Max Planck Institute for Molecular Genetics, July 19, 2010, ppt, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of alternative splicing isoform frequencies from RNA-Seq data, Dagstuhl seminar on Structure Discovery in Biology: Motifs, Networks & Phylogenies, June 6-11, 2010, ppt, abstract, url

M. Nicolae and S. Mangul and I.I. Mandoiu and A. Zelikovsky, Estimation of alternative splicing isoform frequencies from RNA-Seq data, 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url