Publications
CCF
Book Chapters:
P. Skums and A. Artyomenko and O. Glebova and S. Ramachandran and D.S. Campo and Z. Dimitrova and I.I. Mandoiu and A. Zelikovsky and Y. Khudyakov, Pooling Strategy for Massive Viral Sequencing, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 57-83, 2016, publisher url, bibtex
E. Nenastyeva and B. Tork and A. Artyomenko and N. Mancuso and M.I. Khan and R. O'Neill and I.I. Mandoiu and A. Zelikovsky, Reconstruction of Infectious Bronchitis Virus Quasispecies from NGS Data, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 383-400, 2016, publisher url, bibtex
Journal Articles:
S. Dhar and C. Zhang and I.I. Mandoiu and M.S. Bansal, TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity, IEEE/ACM Trans. on Computational Biology and Bioinformatics (early access), 2021, publisher url, bibtex
Conference Articles:
S. Sledzieski and C. Zhang and I.I. Mandoiu and M. Bansal, TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference, Proc. 26th Pacific Symposium on Biocomputing, pp. 119-130, 2021, publisher url, bibtex
S. Dhar and C. Zhang and I.I. Mandoiu and M.S. Bansal, TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity, Proc. 16th International Symposium on Bioinformatics Research and Applications, pp. 203-216, 2020, pdf preprint, publisher url, bibtex
Technical Reports:
S. Sledzieski and C. Zhang and I.I. Mandoiu and M. Bansal, TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference, Cold Spring Harbor Laboratory bioRxiv preprint, , 2019, url, bibtex
M.S. Theses:
S. Dhar, TNet: transmission network inference using within-host strain diversity and its application to geographical tracking of COVID-19 spread, University of Connecticut, Storrs, CT, , 2021, ppt, bibtex