GEDI

Journal Articles:

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Journal of Computational Biology 15, pp. 1155-1171, 2008, pdf preprint, publisher url, bibtex

Conference Articles:

B. Pasaniuc and J. Kennedy and I.I. Mandoiu, Imputation-based local ancestry inference in admixed populations, Proc. 5th International Symposium on Bioinformatics Research and Applications/2nd Workshop on Computational Issues in Genetic Epidemiology, pp. 221-233, 2009, pdf preprint, publisher url, ppt, bibtex

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Proc. 7th Workshop on Algorithms in Bioinformatics, pp. 73-84, 2007, pdf preprint, publisher url, ppt, bibtex

Technical Reports:

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, GEDI: Scalable Algorithms for Genotype Error Detection and Imputation, Cornell University arXiv e-print, 0911.1765, 2009, url, bibtex

Ph.D. Theses:

J. Kennedy, Efficient Algorithms for SNP Genotype Data Analysis using Hidden Markov Models of Haplotype Diversity, University of Connecticut, Storrs, CT, Dec., 2009, pdf preprint, ppt, bibtex

B. Pasaniuc, Scalable Algorithms for Analysis of Genomic Diversity Data, University of Connecticut, Storrs, CT, May, 2008, pdf preprint, url, ppt, bibtex