IsoDE

Book Chapters:

O. Glebova and Y. Temate-Tiagueu and A. Caciula and S. Al Seesi and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Transcriptome Quantification and Differential Expression from NGS Data, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 301-327, 2016, publisher url, bibtex

Journal Articles:

L.L. Boshans and H. Soh and W.M. Wood and M. William and T.M. Nolan and I.I. Mandoiu and Y. Yanagawa and A.V. Tzingounis and A. Nishiyama, Akiko, Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2, Scientific Reports 11, 3552, 2021, publisher url, bibtex

J. Duan and K. Flock and N. Jue and M. Zhang and A. Jones and S. Al Seesi and I.I. Mandoiu and S. Pillai and M. Hoffman and R. O'Neill and S. Zinn and K. Govoni and S. Reed and H. Jiang and Z. Jiang and X. Tian, Dosage Compensation and Gene Expression of the X Chromosome in Sheep, G3: Genes, Genomes, Genetics 9, pp. 305-314, 2019, publisher url, bibtex

J. Duan and M. Zhang and K. Flock and S. Al Seesi and I.I. Mandoiu and A. Jones and E. Johnson and S. Pillai and M. Hoffman and K. McFadden and H. Jiang and S. Reed and K. Govoni and S. Zinn and Z. Jiang and X. Tian, Effects of Maternal Nutrition on the Expression of Genomic Imprinted Genes in Ovine Fetuses, Epigenetics 13, pp. 793-807, 2018, publisher url, bibtex

H. Ebrahimi-Nik and W.L. Corwin and T. Shcheglova and A. Das Mohapatra and I.I. Mandoiu and P.K. Srivastava, CD11c+ MHCIIlo GM-CSF-bone marrow-derived dendritic cells act as antigen donor cells and as antigen presenting cells in neoepitope-elicited tumor immunity against a mouse fibrosarcoma, Cancer Immunology, Immunotherapy 67, pp. 1449–1459, 2018, publisher url, bibtex

I. Mandric and Y.T. Tiagueu and T. Shcheglova and S. Al Seesi and A. Zelikovsky and I.I. Mandoiu, Fast Bootstrapping-Based Estimation of Confidence Intervals of Expression Levels and Differential Expression from RNA-Seq Data, Bioinformatics 33, pp. 3302-3304, 2017, pdf preprint, publisher url, bibtex

S. Al Seesi and Y.T. Tiagueu and A. Zelikovsky and I.I. Mandoiu, Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates, BMC Genomics 15(Suppl 8):S2 , 2014, pdf preprint, publisher url, bibtex