Publications

B. Pasaniuc

Journal Articles:


B. Pasaniuc and R. Garfinkel and I.I. Mandoiu and A. Zelikovsky, Optimal Testing of Digital Microfluidic Biochips, INFORMS Journal on Computing 23, pp. 518-529, 2011, pdf preprint, publisher url, bibtex

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Journal of Computational Biology 15, pp. 1155-1171, 2008, pdf preprint, publisher url, bibtex

A. Gusev and I.I. Mandoiu and B. Pasaniuc, Highly Scalable Genotype Phasing by Entropy Minimization, IEEE/ACM Trans. on Computational Biology and Bioinformatics 5, pp. 252-261, 2008, pdf preprint, publisher url, bibtex

Conference Articles:


F. Rondel and R. Hosseini and B. Sahoo and S. Knyazev and I. Mandric and F. Stewart and I.I. Mandoiu and B. Pasaniuc and A. Zelikovsky, Estimating enzyme participation in metabolic pathways for microbial communities from RNA-seq data, Proc. 16th International Symposium on Bioinformatics Research and Applications, 2020, pdf preprint, bibtex

B. Pasaniuc and J. Kennedy and I.I. Mandoiu, Imputation-based local ancestry inference in admixed populations, Proc. 5th International Symposium on Bioinformatics Research and Applications/2nd Workshop on Computational Issues in Genetic Epidemiology, pp. 221-233, 2009, pdf preprint, publisher url, ppt, bibtex

J. Kennedy and I.I. Mandoiu and B. Pasaniuc, Genotype Error Detection using Hidden Markov Models of Haplotype Diversity, Proc. 7th Workshop on Algorithms in Bioinformatics, pp. 73-84, 2007, pdf preprint, publisher url, ppt, bibtex

B. Pasaniuc and I.I. Mandoiu, Highly Scalable Genotype Phasing by Entropy Minimization, Proc. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 3482-3486, 2006, pdf preprint, publisher url, ppt, bibtex

Technical Reports:


J. Kennedy and I.I. Mandoiu and B. Pasaniuc, GEDI: Scalable Algorithms for Genotype Error Detection and Imputation, Cornell University arXiv e-print, 0911.1765, 2009, url, bibtex

Ph.D. Thesis:


B. Pasaniuc, Scalable Algorithms for Analysis of Genomic Diversity Data, University of Connecticut, Storrs, CT, May, 2008, pdf preprint, url, ppt, bibtex