Publications

F. Alqahtani

Journal Articles:


F. Alqahtani and D. Duckett and S. Pirro and I.I. Mandoiu, Complete mitochondrial genome of the water vole, Microtus richardsoni(Cricetidae, Rodentia), Mitochondrial DNA Part B: Resources, to appear , 2020, bibtex

F. Alqahtani and I.I. Mandoiu, Statistical Mitogenome Assembly with RepeaTs, Journal of Computational Biology, online ahead of print , 2020, publisher url, bibtex

J. Duan and Z. Jiang and F. Alqahtani and I.I. Mandoiu and D. Hong and X. Zheng and S.L. Marjani and J. Chen and X. Tian, Methylome dynamics of bovine gametes and in vivo early embryos, Frontiers in Genetics 10:512, 2019, publisher url, bibtex

M.S. Muyyarikkandy and F. Alqahtani and I.I. Mandoiu and M.A. Amalaradjou, Draft Genome Sequence of Lactobacillus paracasei DUP 13076, Which Exhibits Potent Antipathogenic Effects against Salmonella enterica Serovars Enteritidis, Typhimurium, and Heidelberg, Genome Announcements 6, pp. e00065-18, 2018, publisher url, bibtex

M.S. Muyyarikkandy and F. Alqahtani and I.I. Mandoiu and M.A. Amalaradjou, Draft Genome Sequence of Lactobacillus rhamnosus NRRL B-442, a Potential Probiotic Strain, Genome Announcements 6, pp. e00046-18, 2018, publisher url, bibtex

A.M. Al-Swailem, M. Shehata, F.M. Abu-Duhier, E.J. Al-Yamani, K.A. Al-Busadah, M.S. Al-Arawi, A.Y. Al-Khider, A.N. Al-Muhaimeed, F. Alqahtani, M. Manee, B.M. Al-Shomrani, S.M. Al-Qhtani, A.S. Al-Harthi, K.C. Akdemir, M.S. Inan, and H.H. Otu, Sequencing, Analysis, and Annotation of Expressed Sequence Tags for Camelus dromedarius, PLoS ONE 5, pp. e10720, 2010, publisher url, bibtex

Conference Articles:


F. Alqahtani and I.I. Mandoiu, Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples, Proc. 16th International Symposium on Bioinformatics Research and Applications, 2020, pdf preprint, bibtex

F. Alqahtani and I.I. Mandoiu, SMART2: Multi-Library Statistical Mitogenome Assembly with Repeats, Proc. 9th International Conference on Computational Advances in Bio and Medical Sciences, pp. 184-198, 2020, pdf preprint, publisher url, ppt, bibtex

Technical Reports:


F. Alqahtani and I.I. Mandoiu, SMART: Statistical Mitogenome Assembly with Repeats, Cold Spring Harbor Laboratory bioRxiv preprint, , 2019, url, bibtex

Ph.D. Thesis:


F. Alqahtani, Algorithms for Mitochondrial Genome Assembly and Haplogroup Assignment from Low-Coverage Whole-Genome Sequencing Data, University of Connecticut, Storrs, CT, January, 2020, url, ppt, bibtex