SILP

Book Chapters:

I. Mandric and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Scaffolding Algorithms, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 105-131, 2016, publisher url, bibtex

Journal Articles:

J. Lindsay and H. Salooti and I.I. Mandoiu and A. Zelikovsky, ILP-based maximum likelihood genome scaffolding, BMC Bioinformatics 15(Suppl 9):S9, 2014, pdf preprint, publisher url, bibtex

Conference Articles:

J. Lindsay and H. Salooti and A. Zelikovsky and I.I. Mandoiu, Scalable Genome Scaffolding using Integer Linear Programming, Proc. ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pp. 377-383, 2012, pdf preprint, publisher url, ppt, bibtex

Ph.D. Theses:

J. Lindsay, Scalable Optimization Algorithms for High-throughput Genomic Data, University of Connecticut, Storrs, CT, May, 2015, pdf preprint, url, bibtex