2005

Journal Articles:

B. DasGupta and K.M. Konwar and I.I. Mandoiu and A.A. Shvartsman, DNA-BAR: Distinguisher Selection for DNA Barcoding, Bioinformatics 21, pp. 3424-3426, 2005, pdf preprint, publisher url, bibtex

B. DasGupta and K.M. Konwar and I.I. Mandoiu and A.A. Shvartsman, Highly Scalable Algorithms for Robust String Barcoding, International Journal of Bioinformatics Research and Applications 1, pp. 145-161, 2005, pdf preprint, publisher url, bibtex

M. Karpinski and I.I. Mandoiu and A. Olshevsky and A. Zelikovsky, Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem, Algorithmica 42, pp. 109-120, 2005, pdf preprint, publisher url, bibtex

H. Chen and C.-K. Cheng and A.B. Kahng and I.I. Mandoiu and Q. Wang and B. Yao, The Y-Architecture for On-Chip Interconnect: Analysis and Methodology, IEEE Trans. on CAD 24, pp. 588-599, 2005, pdf preprint, publisher url, bibtex

I.I. Mandoiu and C. Prajescu and D. Trinca, Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays, LNCS Transactions on Computational Systems Biology II, pp. 124-137, 2005, pdf preprint, publisher url, bibtex

S.V. Babin and A.B. Kahng and I.I. Mandoiu and S. Muddu, Improving CD accuracy and throughput by subfield scheduling in electron beam mask writing, Journal of Vacuum Science & Technology B: Microelectronics and Nanometer Structures 23, pp. 3094-3100, 2005, publisher url, bibtex

P. Gupta and A.B. Kahng and I.I. Mandoiu and P. Sharma, Layout-Aware Scan Chain Synthesis for Improved Path Delay Fault Coverage, IEEE Trans. on CAD 24, pp. 1104-1114, 2005, publisher url, bibtex

Conference Articles:

A.B. Kahng and I.I. Mandoiu and X. Xu and A. Zelikovsky, Yield-driven multi-project reticle design and wafer dicing, Proc. 25th Annual BACUS Symposium on Photomask Technology, pp. 1247-1257, 2005, pdf preprint, publisher url, ppt, bibtex

I.I. Mandoiu and D. Trinca, Exact and Approximation Algorithms for DNA Tag Set Design, Proc. 16th Annual Symposium on Combinatorial Pattern Matching, pp. 383-393, 2005, pdf preprint, publisher url, ppt, bibtex

I.I. Mandoiu and C. Prajescu and D. Trinca, Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays, Proc. 5th International Conference on Computational Science, Part II, pp. 994-1002, 2005, pdf preprint, publisher url, ppt, bibtex

B. DasGupta and K.M. Konwar and I.I. Mandoiu and A.A. Shvartsman, Highly Scalable Algorithms for Robust String Barcoding, Proc. 5th International Conference on Computational Science, Part II, pp. 1020-1028, 2005, pdf preprint, publisher url, ppt, bibtex

K.M. Konwar and I.I. Mandoiu and A.C. Russell and A.A. Shvartsman, Improved Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints, Proc. 3rd Asia-Pacific Bioinformatics Conference, pp. 41-50, 2005, pdf preprint, publisher url, ppt, bibtex

Technical Reports:

I.I. Mandoiu and C. Prajescu and D. Trinca, Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays, Cornell University arXiv e-print, cs/0502054, 2005, url, bibtex

B. DasGupta and K.M. Konwar and I.I. Mandoiu and A.A. Shvartsman, Highly Scalable Algorithms for Robust String Barcoding, Cornell University arXiv e-print, cs/0502065, 2005, url, bibtex

I.I. Mandoiu and D. Trinca, Exact and Approximation Algorithms for DNA Tag Set Design, Cornell University arXiv e-print, cs/0503057, 2005, url, bibtex

I.I. Mandoiu and C. Prajescu, High-Throughput SNP Genotyping by SBE/SBH, Cornell University arXiv e-print, cs/0512052, 2005, url, bibtex

C. Albrecht and A.B. Kahng and I.I. Mandoiu and A. Zelikovsky, Multicommodity Flow Algorithms for Buffered Global Routing, Cornell University arXiv e-print, cs/0508045, 2005, url, bibtex

M.S. Theses:

C. Prajescu, Multiplexing Algorithms for High-Throughput Genomic Based Assays, University of Connecticut, Storrs, CT, December, 2005, pdf preprint, url, bibtex

D. Trinca, Exact and Approximation Algorithms for DNA Tag Set Design, University of Connecticut, Storrs, CT, December, 2005, pdf preprint, url, bibtex