Journal Articles:

M. Moussa and I.I. Mandoiu, Locality Sensitive Imputation for Single-Cell RNA-Seq Data, Journal of Computational Biology 26, pp. 822-835, 2019, publisher url, bibtex

L.L. Boshans and D.C. Factor and V. Singh and J. Liu and C. Zhao and I.I. Mandoiu and Q.R. Lu and P. Casaccia and P.J. Tesar and A. Nishiyama, The chromatin environment around interneuron genes in oligodendrocyte precursor cells and their potential for interneuron reprogramming, Frontiers in Neuroscience 13:829, 2019, publisher url, bibtex

H. Ebrahimi-Nik and J. Michaux and W.L. Corwin and G.L.J. Keller and T. Shcheglova and H.S. Pak and G. Coukos and B.M. Baker and I.I. Mandoiu and M. Bassani-Sternberg and P.K. Srivastava, Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection, JCI Insight 4, 2019, publisher url, bibtex

J. Duan and Z. Jiang and F. Alqahtani and I.I. Mandoiu and D. Hong and X. Zheng and S.L. Marjani and J. Chen and X. Tian, Methylome dynamics of bovine gametes and in vivo early embryos, Frontiers in Genetics 10:512, 2019, publisher url, bibtex

A.L. Sedlacek and T.P. Younker and Y. Zhou and L. Borghesi and T. Shcheglova and I.I. Mandoiu and R.J. Binder, CD91 on dendritic cells governs immunosurveillance of nascent, emerging tumors, JCI Insight 4(7):e127239, 2019, publisher url, bibtex

J. Duan and K. Flock and N. Jue and M. Zhang and A. Jones and S. Al Seesi and I.I. Mandoiu and S. Pillai and M. Hoffman and R. O'Neill and S. Zinn and K. Govoni and S. Reed and H. Jiang and Z. Jiang and X. Tian, Dosage Compensation and Gene Expression of the X Chromosome in Sheep, G3: Genes, Genomes, Genetics 9, pp. 305-314, 2019, publisher url, bibtex

Technical Reports:

S. Sledzieski and C. Zhang and I.I. Mandoiu and M. Bansal, TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference, Cold Spring Harbor Laboratory bioRxiv preprint, , 2019, url, bibtex

F. Alqahtani and I.I. Mandoiu, SMART: Statistical Mitogenome Assembly with Repeats, Cold Spring Harbor Laboratory bioRxiv preprint, , 2019, url, bibtex

Laehnemann D, et al., 12 Grand challenges in single-cell data science, PeerJ Preprints, , 2019, url, bibtex

Ph.D. Theses:

M. Moussa, Computational Methods for the Analysis of Single-Cell RNA-Seq Data, University of Connecticut, Storrs, CT, April, 2019, url, ppt, bibtex