2021

Edited Books & Proceedings:

S.K. Jha and I.I. Mandoiu and S. Rajasekaran and P. Skums and A. Zelikovsky (Eds.), Proc. 10th International Conference on Computational Advances in Bio and Medical Sciences, Springer-Verlag Lecture Notes in Bioinformatics vol. 12686, 2021, publisher url, bibtex

Journal Articles:

S. Dhar and C. Zhang and I.I. Mandoiu and M.S. Bansal, TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity, IEEE/ACM Trans. on Computational Biology and Bioinformatics (early access), 2021, publisher url, bibtex

F. Rondel and R. Hosseini and B. Sahoo and S. Knyazev and I. Mandric and F. Stewart and I.I. Mandoiu and B. Pasaniuc and Y.Porozov and A. Zelikovsky, Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data, Journal of Computational Biology 28, pp. 842-855, 2021, publisher url, bibtex

M. Moussa and I.I. Mandoiu, SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis, Journal of Computational Biology 28, pp. 820-841, 2021, publisher url, bibtex

L.L. Boshans and H. Soh and W.M. Wood and M. William and T.M. Nolan and I.I. Mandoiu and Y. Yanagawa and A.V. Tzingounis and A. Nishiyama, Akiko, Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2, Scientific Reports 11, 3552, 2021, publisher url, bibtex

C.A. Brennick and M.M. George and M.R. Moussa and A.T. Hagymasi and Sahar Al Seesi and T.V. Shcheglova and R.P. Englander and G.L.J. Keller and J.L. Balsbaugh and B.M. Baker and A. Schietinger and I.I. Mandoiu and P.K. Srivastava, An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection, J Clin Invest. 131(3):e142823, 2021, publisher url, bibtex

Conference Articles:

M. Moussa and I.I. Mandoiu, Computational Cell Cycle Analysis of Single Cell RNA-Seq Data, Proc. 10th International Conference on Computational Advances in Bio and Medical Sciences, pp. 71-87, 2021, publisher url, bibtex

S. Sledzieski and C. Zhang and I.I. Mandoiu and M. Bansal, TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference, Proc. 26th Pacific Symposium on Biocomputing, pp. 119-130, 2021, publisher url, bibtex

Technical Reports:

M. Moussa and I.I. Mandoiu, SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis, Cold Spring Harbor Laboratory bioRxiv preprint, , 2021, url, bibtex

M.S. Theses:

S. Dhar, TNet: transmission network inferenceusing within-host strain diversity andits application to geographical trackingof COVID-19 spread, University of Connecticut, Storrs, CT, , 2021, ppt, bibtex