J. Lindsay

M. Bemis and D. Chen and Z. Dicesare and N. Kruczek and R. Morillo and J. Lindsay and M. Lydon and I.I. Mandoiu, Cloud-Based Transcriptome Quantification from RNASequencing Reads, Poster at 11th International Symposium on Bioinformatics Research and Applications, Norfolk, VA, June 7-10, 2015, ppt, url

A. Caciula and O. Glebova and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Simulated Regression Algorithm for Transcriptome Quantification, 10th International Symposium on Bioinformatics Research and Applications, June 28-30, 2014, abstract, url

I. Mandric and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, SILP3: Maximum Likelihood Approach to Scaffolding, Proc. 4th IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 2-4, 2014, abstract, url

A. Caciula and O. Glebova and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Deterministic Regression Algorithm for Transcriptome Frequency Estimation, Proc. 4th IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 2-4, 2014, abstract, url

J. Lindsay and C.E. Nelson and I.I. Mandoiu, Gene expression deconvolution using single cells, 63rd Annual Meeting of the American Society of Human Genetics, Oct 22-26, 2013, url

J. Lindsay and C.E. Nelson and I.I. Mandoiu, Towards Whole Transcriptome Deconvolution Using Single-cell Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

A. Caciula and A. Zelikovsky and S. Mangul and J. Lindsay and I.I. Mandoiu, Monte-Carlo Regression Algorithm for Isoform Frequency Estimation from RNA-Seq Data, Proc. 3rd IEEE International Conference on Computational Advances in Bio and Medical Sciences, June 12-14, 2013, ppt, abstract, url

J. Lindsay and C. Jakuba and C.E. Nelson and I.I. Mandoiu, Gene Expression Deconvolution with Single-cell Data, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

E. Hemphill and J. Lindsay and C. Lee and C.E. Nelson and I.I. Mandoiu, Biomarker and Classifier Selection in Diverse Genetic Datasets, 9th International Symposium on Bioinformatics Research and Applications, May 20-22, 2013, ppt, abstract, url

J. Lindsay and H. Salooti and A. Zelikovsky and I.I. Mandoiu, Scaffolding Large Genomes using Integer Linear Programming, 8th International Symposium on Bioinformatics Research and Applications, May 21-23, 2012, ppt, abstract, url

J. Lindsay and I.I. Mandoiu and H. Salooti and A. Zelikovsky, Accurate Scaffolding of Large Genomes using Integer Programming and Non-Serial Dynamic Programming, Poster at 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 23-25, 2012, ppt, abstract, url

R.J. O'Neill and J. Lindsay and D. Carone and T. Heider and S. Al Seesi and I.I. Mandoiu and A. Pask, The Utility of Next Generation Sequencing for Genome Scale Studies, Proc. 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 3-5, 2011, abstract, url

J. Lindsay and J. Zhang and T. Farnham and E. Bullwinkel and H. Salooti and I.I. Mandoiu and Y. Wu and A. Zelikovsky and R.J. O'Neill, Scaffolding Draft Genomes Using Paired Sequencing Data, Poster at 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, Feb. 3-5, 2011, ppt, abstract, url

J. Lindsay and J. Zhang and I.I. Mandoiu and Y. Wu and M. Renfree and A. Pask and T. Heider and C. Obergfell and R.J. O'Neill, Novel multi-platform next generation assembly methods for mammalian genomes, Poster at 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

J. Lindsay and D.M. Carone and E. Murchison and A. Pask and G.J. Hannon and I.I. Mandoiu and R.J. O'Neill, Unique small RNA signatures uncovered in the tammar wallaby genome, 6th International Symposium on Bioinformatics Research and Applications , May 23-26, 2010, ppt, abstract, url

A. Gusev and S. Kentros and J. Lindsay and I.I. Mandoiu and B. Pasaniuc, A Comparison of Algorithms for Species Identification Based on DNA Barcodes, Invited talk, 2nd International Barcode of Life Conference, Academia Sinica, Taipei, Taiwan, Sept. 17-21, 2007, ppt, url