Abstracts and Unpublished Presentations

Epi-Seq

C.A. Brennick and M.M. George and A.T. Hagymasi and T.V. Shcheglova and S. Al Seesi and I.I. Mandoiu and P.K. Srivastava, Unbiased testing of several hundred tumor-specific single nucleotide variants of a tumor for protective immunogenicity and CD8+ response reveals surprises, IMMUNOLOGY 2018, Austin, TX, May 4-8, 2018, url

S.H. Karandikar and T.V. Shcheglova and A.T. Hagymasi and C.A. Brennick and I.I. Mandoiu and P.K. Srivastava, Unbiased testing of all single nucleotide variants specific to a tumor for anti-tumor CD8+ T cell immune response, IMMUNOLOGY 2018, Austin, TX, May 4-8, 2018, url

I.I. Mandoiu, Computational methods for genomics-guided cancer immunotherapy, UCONN Medical Deans Seminar Series "Interdisciplinary Conversations on Innovations in Informatics", Jan. 25, 2018, ppt

S. Al Seesi, GeNeo: Bioinformatics toolbox for Genomics guided Neo-epitope prediction, 7th International Conference on Computational Advances in Bio and Medical Sciences, Orlando, FL, October 19-21, 2017, ppt, url

I.I. Mandoiu, Cancer Vaccine Design, CICATS Science Cafe, Oct. 9, 2015, ppt, url

S. Al Seesi, Computational methods for genomics-guided immunotherapy, CICATS Science Cafe, Oct. 9, 2015, ppt, url

I.I. Mandoiu, Computational methods for genomics-guided immunotherapy, Invited talk at 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, Miami, FL, October 15-17, 2015, ppt, url

S. Al Seesi and I.I. Mandoiu, Computational methods for genomics-guided immunotherapy, Mini-tutorial at 11th International Symposium on Bioinformatics Research and Applications, Norfolk, VA, June 7-10, 2015, ppt, url

F. Duan and J. Duitama and S. Al Seesi and C. Ayres and S. Corcelli and A. Pawashe and T. Blanchard and D. McMahon and J. Sidney and A. Sette and B. Baker and I.I. Mandoiu and P.K. Srivastava, Genomic and bioinformatic profiling of mutational neo-epitopes reveals new rules to predict anti-cancer immunogenicity, Poster at ImmunoGenomics Symposium at The Jackson Laboratory for Genomic Medicine, Nov 12-14, 2014, ppt, abstract, url

I.I. Mandoiu, Scalable Algorithms for Next-Generation Sequencing Data Analysis, Booth Engineering Center for Advanced Technology Workshop on HPC, May 16, 2013, ppt, url

I.I. Mandoiu, Towards Personalized Genomics-Guided Cancer Immunotherapy, UConn/JAX Genomics Symposium, Sept 6-7, 2012, ppt, url

I.I. Mandoiu, Next-Generation Sequencing: Challenges and Opportunities, Invited talk, UCONN Department of Physiology and Neurobiology, March 16, 2011, ppt, url

I.I. Mandoiu, Bioinformatics Tools for Personalized Cancer Immunotherapy, Invited talk, UCONN Working Group on Multiscale Computational Science and Engineering , Feb. 25, 2011, ppt

J. Duitama, Bioinformatics Methods for Diagnosis and Treatment of Human Diseases, Ph.D. Dissertation Proposal, Dec. 2, 2009, ppt

J. Duitama and I.I. Mandoiu and P.K. Srivastava, Bioinformatics pipeline for detection of immunogenic cancer mutations by high throughput mRNA sequencing, Talk at 9th Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics, Oct 27-30, 2009, ppt, abstract, url

J. Duitama and I.I. Mandoiu and P.K. Srivastava, Bioinformatics pipeline for detection of immunogenic cancer mutations by high throughput mRNA sequencing, Poster, 5th International Symposium on Bioinformatics Research and Applications, Ft. Lauderdale, FL, May 13-16, 2009, ppt, abstract, url