Abstracts and Unpublished Presentations

2019

F. Alqahtani and I.I. Mandoiu, SMART2: Multi-Sample Statistical Mitogenome Assembly with Repeats, 9th International Conference on Computational Advances in Bio and Medical Sciences, Miami, Florida, Nov. 15-17, 2019, ppt, url

M. Moussa and I.I. Mandoiu, Extensions to the SC1 pipeline for web-based single cell RNA-seq analysis, 9th International Conference on Computational Advances in Bio and Medical Sciences, Miami, Florida, Nov. 15-17, 2019, ppt, url

I. Mandric and I.I. Mandoiu and A. Zelikovsky and P. Skums, Genotype imputation from single cell sequencing data by integrating phylogenetic priors, 9th International Conference on Computational Advances in Bio and Medical Sciences, Miami, Florida, Nov. 15-17, 2019, url

I.I. Mandoiu, Single Cell RNA-Seq Data Analysis, ANSC Seminar, Sept. 27, 2019, ppt, url

E. Sherafat and J. Force and I.I Mandoiu, Positive-Unlabeled Learning for Cancer Neoepitope Identification, 8th Workshop on Computational Advances in Molecular Epidemiology, Niagara Falls, NY, Sept. 7, 2019, ppt, url

S. Dhar and C. Zhang and I.I Mandoiu and M.S. Bansal, TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity, 8th Workshop on Computational Advances in Molecular Epidemiology, Niagara Falls, NY, Sept. 7, 2019, url

F. Alqahtani, Algorithms for Circular Organelle Genome Assembly, Ph.D. Proposal, July 23, 2019, ppt

E. Sherafat and I.I. Mandoiu, PU-Caller: Sensitive somatic variant calling using positive-unlabeled learning, 15th International Symposium on Bioinformatics Research and Applications, Barcelona, Spain, June 3-6, 2019, ppt, url

M. Moussa and I.I. Mandoiu, SC1: A Web-based Single Cell RNA-Seq Analysis Pipeline, 33rd New England Statistics Symposium, Hartford, CT, May 15-17, 2019, ppt, url

M. Moussa and I.I. Mandoiu, SC1: A Web-based Single Cell RNA-Seq Analysis Pipeline, Poster at 5th Annual Single Cell Analysis USA Congress, Boston, MA, May 14-15, 2019, ppt, url

H. Ebrahimi-Nik and T. Shcheglova and J. Michaux and H. Pak and E. Sherafat and S. Al Seesi and I.I. Mandoiu and M. Bassani-Sternberg and P.K. Srivastava, Mass spectroscopy-defined neoepitopes are a rich source of tumor rejection-mediating neoepitopes in a mouse sarcoma, IMMUNOLOGY 2019, San Diego CA, May 9–13, 2019, url

E. Sherafat and I.I. Mandoiu, PU-Caller: Sensitive Somatic Variant Calling Using Positive-Unlabeled Learning, Poster at 23rd Annual International Conference on Research in Computational Molecular Biology (RECOMB), Washington, DC, May 5-8, 2019, ppt, url

S. Sledzieski and C. Zhang and I.I. Mandoiu and M. Bansal, TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference, Poster at 23rd Annual International Conference on Research in Computational Molecular Biology (RECOMB), Washington, DC, May 5-8, 2019, url

A. Zelikovsky and I. Mandric and P. Skums and I.I. Mandoiu and B. Pasaniuc and P.K. Srivastava, Imputation of single cell cancer genotypes, Poster at the 2019 AACR Annual Meeting, Atlanta, GA, March 29 - Apr 3, 2019, url

J.E. Duan and Z. Jiang and F. Alqahtani and I.I. Mandoiu and H. Dong and X. Zheng and S.L. Marjani and J. Chen and X.C. Tian, Whole-genome bisulfite sequencing of bovine gametes and in vivo-produced pre-implantation embryos, Proceedings of the Annual Conference of the International Embryo Technology Society, New Orleans, Louisiana, Jan. 20-23, 2019, url