Experimental results in searching for structural motifs

Now we illustrate practical results in identifying a functional structural motif (Tyrosine phosphorylated substrate) in some of the PDB structures , we start with 1C86 and which has this functional motif between atoms (348 and 392) (please refer the pdb file of protein 1C86. Now we make the atom list form 348 to 392 in 1C86 as $S_1$ and apply our Algorithm6 with several other proteins in our PDB database and after this we found 1LAR,2GJT,2NV5 and 2H4V having highly similar substructure (Tyrosine phosphorylated substrate) structurally similar to the one in 1C86 between atoms 348 and 392, please see the below table for the actual locations of this in the PDB files. Due to space restrictions we are unable to include the 3D-Visualization structures in the paper but we provide files (1c86.pdf, 1LAR.pdf,2GJT.pdf,2H4V.pdf and 2NV5.pdf) for the reader to actually look at these structures.

Table 6: Regions having Tyrosine phosphorylated substrate found by Algorithm6

Protein	Region(start-end)
1LAR	Atom 383 to 425
2GJT	Atom 427 to 472
2NV5	Atom 430 to 470
2H4V	Atom 440 to 486