Publications

2013

Journal Articles:


Y. Huang and M. Khan and I.I. Mandoiu, Neuraminidase subtyping of Avian influenza viruses with PrimerHunter-designed primers and quadruplicate primer pools, PLOS ONE Volume 8, Issue 11, e81842, 2013, publisher url, bibtex

L. Menikarachchi and D. Hill and M. Hamdalla and I.I. Mandoiu and D. Grant, In silico enzymatic synthesis of a 400,000 compound biochemical database for non-targeted metabolomics, Journal of Chemical Information and Modeling 53, pp. 2483-2492, 2013, publisher url, bibtex

P. Skums and N. Mancuso and A. Artyomenko and B. Tork and I.I. Mandoiu and Y. Khudyakov and A. Zelikovsky, Reconstruction of Viral Population Structure from Next-Generation Sequencing Data Using Multicommodity Flows, BMC Bioinformatics 14(Suppl 9):S2, 2013, pdf preprint, publisher url, bibtex

M. Hamdalla and I.I. Mandoiu and D. Hill and S. Rajasekaran and D. Grant, BioSM: A metabolomics tool for identifying endogenous mammalian biochemical structures in chemical structure space, Journal of Chemical Information and Modeling 53, pp. 601-612, 2013, publisher url, bibtex

Conference Articles:


S. Mangul and A. Caciula and S. Al Seesi and D. Brinza and A. Rouf Banday and R. Kanadia and I.I. Mandoiu and A. Zelikovsky, Flexible Approach for Novel Transcript Reconstruction from RNA-Seq Data using Maximum Likelihood Integer Programming, Proc. 5th International Conference on Bioinformatics and Computational Biology, pp. 25-34, 2013, pdf preprint, publisher url, bibtex

M.S. Thesis:


G. Ilie, Algorithms for Multisample Read Binning, University of Connecticut, Storrs, CT, Dec., 2013, pdf preprint, ppt, bibtex