NGSTools

Journal Articles:

J. Duan and K. Flock and N. Jue and M. Zhang and A. Jones and S. Al Seesi and I.I. Mandoiu and S. Pillai and M. Hoffman and R. O'Neill and S. Zinn and K. Govoni and S. Reed and H. Jiang and Z. Jiang and X. Tian, Dosage Compensation and Gene Expression of the X Chromosome in Sheep, G3: Genes, Genomes, Genetics 9, pp. 305-314, 2019, publisher url, bibtex

J. Duan and M. Zhang and K. Flock and S. Al Seesi and I.I. Mandoiu and A. Jones and E. Johnson and S. Pillai and M. Hoffman and K. McFadden and H. Jiang and S. Reed and K. Govoni and S. Zinn and Z. Jiang and X. Tian, Effects of Maternal Nutrition on the Expression of Genomic Imprinted Genes in Ovine Fetuses, Epigenetics 13, pp. 793-807, 2018, publisher url, bibtex

F. Duan and J. Duitama and S. Al Seesi and C. Ayres and S. Corcelli and A. Pawashe and T. Blanchard and D. McMahon and J. Sidney and A. Sette and B. Baker and I.I. Mandoiu and P.K. Srivastava, Genomic and bioinformatic profiling of mutational neo-epitopes reveals new rules to predict anti-cancer immunogenicity, Journal of Experimental Medicine 211, pp. 2231-2248, 2014, publisher url, bibtex

J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, BMC Genomics 13(Suppl 2):S6, 2012, pdf preprint, publisher url, bibtex

Conference Articles:

J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, Proc. 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, pp. 87-92, 2011, pdf preprint, publisher url, ppt, bibtex

Ph.D. Theses:

J. Duitama, Bioinformatics Methods for Diagnosis and Treatment of Human Diseases, University of Connecticut, Storrs, CT, Dec., 2010, pdf preprint, ppt, bibtex