Publications

NGSTools

Journal Articles:


F. Duan and J. Duitama and S. Al Seesi and C. Ayres and S. Corcelli and A. Pawashe and T. Blanchard and D. McMahon and J. Sidney and A. Sette and B. Baker and I.I. Mandoiu and P.K. Srivastava, Genomic and bioinformatic profiling of mutational neo-epitopes reveals new rules to predict anti-cancer immunogenicity, Journal of Experimental Medicine 211, pp. 2231-2248, 2014, publisher url, bibtex

J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, BMC Genomics 13(Suppl 2):S6, 2012, pdf preprint, publisher url, bibtex

Conference Articles:


J. Duitama and P.K. Srivastava and I.I. Mandoiu, Towards Accurate Detection and Genotyping of Expressed Variants from Whole Transcriptome Sequencing Data, Proc. 1st IEEE International Conference on Computational Advances in Bio and Medical Sciences, pp. 87-92, 2011, pdf preprint, publisher url, ppt, bibtex

Ph.D. Theses:


J. Duitama, Bioinformatics Methods for Diagnosis and Treatment of Human Diseases, University of Connecticut, Storrs, CT, Dec., 2010, pdf preprint, ppt, bibtex