Publications

DBI-1564936

Book Chapters:


O. Glebova and Y. Temate-Tiagueu and A. Caciula and S. Al Seesi and A. Artyomenko and S. Mangul and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Transcriptome Quantification and Differential Expression from NGS Data, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 301-327, 2016, publisher url, bibtex

I. Mandric and J. Lindsay and I.I. Mandoiu and A. Zelikovsky, Scaffolding Algorithms, In I.I. Mandoiu and A. Zelikovsky, Computational Methods for Next Generation Sequencing Data Analysis, John Wiley & Sons, pp. 105-131, 2016, publisher url, bibtex

Journal Articles:


M.S. Muyyarikkandy and F. Alqahtani and I.I Mandoiu and M.A. Amalaradjou, Draft Genome Sequence of Lactobacillus paracasei DUP 13076, Which Exhibits Potent Antipathogenic Effects against Salmonella enterica Serovars Enteritidis, Typhimurium, and Heidelberg, Genome Announcements 6, pp. e00065-18, 2018, publisher url, bibtex

M.S. Muyyarikkandy and F. Alqahtani and I.I Mandoiu and M.A. Amalaradjou, Draft Genome Sequence of Lactobacillus rhamnosus NRRL B-442, a Potential Probiotic Strain, Genome Announcements 6, pp. e00046-18, 2018, publisher url, bibtex

I. Mandric and Y.T. Tiagueu and T. Shcheglova and S. Al Seesi and A. Zelikovsky and I.I. Mandoiu, Fast Bootstrapping-Based Estimation of Confidence Intervals of Expression Levels and Differential Expression from RNA-Seq Data, Bioinformatics 33, pp. 3302-3304, 2017, pdf preprint, publisher url, bibtex

Y. Temate-Tiagueu and S. Al Seesi and M. Mathew and I. Mandric and A. Rodriguez and K. Bean and Q. Cheng and O. Glebova and I.I. Mandoiu and N.B. Lopanik and A. Zelikovsky, Inferring metabolic pathway activity levels from RNA-Seq data, BMC Genomics 17(Suppl 5):542, pp. 493-503, 2016, publisher url, bibtex

Conference Articles:


M. Moussa and I.I. Mandoiu, Locality Sensitive Imputation for Single-Cell RNA-Seq Data, Proc. 14th International Symposium on Bioinformatics Research and Applications, 2018, pdf preprint, ppt, bibtex

I. Mandric and S. Knyazev and C. Padilla and F. Stewart and I.I. Mandoiu and A. Zelikovsky, Metabolic analysis of metatranscriptomic data from planktonic communities, Proc. 13th International Symposium on Bioinformatics Research and Applications, pp. 396-402, 2017, publisher url, ppt, bibtex

Technical Reports:


M. Moussa and I.I. Mandoiu, Locality Sensitive Imputation for Single-Cell RNA-Seq Data, Cold Spring Harbor Laboratory bioRxiv preprint, , 2018, url, bibtex